| Platz | Mannschaft | Pkt. | Gelbe Karten | Gelb-Rote Karten | Rote Karten |
|---|---|---|---|---|---|
| 1 | SC Freiburg | 67 | 56 | 2 | 1 |
| 1 | SpVgg Greuther Fürth | 67 | 59 | 1 | 1 |
| 3 | FC Augsburg | 68 | 65 | 1 | 0 |
| 4 | Karlsruher SC | 69 | 58 | 2 | 1 |
| 5 | Kickers Offenbach | 70 | 59 | 2 | 1 |
| 6 | Hansa Rostock | 73 | 65 | 1 | 1 |
| 7 | TSV 1860 München | 74 | 62 | 4 | 0 |
| 7 | SV Wacker Burghausen | 74 | 68 | 2 | 0 |
| 9 | Eintracht Braunschweig | 78 | 67 | 2 | 1 |
| 10 | SC Paderborn 07 | 79 | 74 | 0 | 1 |
| 11 | 1. FC Köln | 82 | 58 | 3 | 3 |
| 12 | Rot-Weiss Essen | 89 | 70 | 3 | 2 |
| 13 | FC Carl Zeiss Jena | 93 | 75 | 1 | 3 |
| 14 | MSV Duisburg | 94 | 73 | 2 | 3 |
| 15 | SpVgg Unterhaching | 95 | 79 | 2 | 2 |
| 16 | Erzgebirge Aue | 96 | 69 | 4 | 3 |
| 17 | 1. FC Kaiserslautern | 98 | 67 | 7 | 2 |
| 18 | TuS Koblenz | 101 | 84 | 4 | 1 |