| Platz | Mannschaft | Pkt. | Gelbe Karten | Gelb-Rote Karten | Rote Karten |
|---|---|---|---|---|---|
| 1 | Eintracht Frankfurt | 54 | 46 | 1 | 1 |
| 2 | FC St. Pauli | 62 | 53 | 3 | 0 |
| 3 | 1. FC Union Berlin | 63 | 52 | 2 | 1 |
| 4 | SC Paderborn 07 | 64 | 59 | 0 | 1 |
| 5 | Eintracht Braunschweig | 68 | 60 | 1 | 1 |
| 6 | FSV Frankfurt | 70 | 60 | 0 | 2 |
| 7 | FC Ingolstadt | 76 | 66 | 0 | 2 |
| 8 | Dynamo Dresden | 77 | 64 | 1 | 2 |
| 9 | VfL Bochum | 86 | 65 | 7 | 0 |
| 10 | SpVgg Greuther Fürth | 87 | 70 | 4 | 1 |
| 11 | TSV 1860 München | 88 | 70 | 1 | 3 |
| 12 | Hansa Rostock | 89 | 76 | 1 | 2 |
| 13 | Fortuna Düsseldorf | 92 | 81 | 2 | 1 |
| 14 | Erzgebirge Aue | 94 | 73 | 2 | 3 |
| 15 | Alemannia Aachen | 95 | 76 | 3 | 2 |
| 16 | Energie Cottbus | 96 | 75 | 2 | 3 |
| 17 | Karlsruher SC | 97 | 89 | 1 | 1 |
| 18 | MSV Duisburg | 107 | 95 | 4 | 0 |