| Platz | Mannschaft | Pkt. | Gelbe Karten | Gelb-Rote Karten | Rote Karten |
|---|---|---|---|---|---|
| 1 | Kickers Offenbach | 67 | 67 | 0 | 0 |
| 1 | Bayern München II | 67 | 56 | 2 | 1 |
| 3 | VfB Stuttgart II | 70 | 59 | 2 | 1 |
| 4 | SC Paderborn 07 | 75 | 65 | 0 | 2 |
| 5 | SV Sandhausen | 78 | 65 | 1 | 2 |
| 6 | SpVgg Unterhaching | 83 | 56 | 4 | 3 |
| 7 | Dynamo Dresden | 84 | 71 | 1 | 2 |
| 8 | 1. FC Union Berlin | 93 | 74 | 3 | 2 |
| 9 | Kickers Emden | 98 | 90 | 1 | 1 |
| 9 | Fortuna Düsseldorf | 98 | 80 | 6 | 0 |
| 11 | FC Carl Zeiss Jena | 99 | 78 | 2 | 3 |
| 12 | Eintracht Braunschweig | 101 | 96 | 0 | 1 |
| 12 | Wuppertaler SV | 101 | 82 | 3 | 2 |
| 14 | SV Wacker Burghausen | 103 | 79 | 3 | 3 |
| 15 | Stuttgarter Kickers | 107 | 83 | 3 | 3 |
| 16 | VfR Aalen | 113 | 81 | 4 | 4 |
| 16 | Erzgebirge Aue | 113 | 77 | 2 | 6 |
| 18 | Jahn Regensburg | 115 | 91 | 3 | 3 |
| 19 | SV Werder Bremen II | 116 | 96 | 5 | 1 |
| 20 | FC Rot-Weiß Erfurt | 129 | 93 | 2 | 6 |