| Platz | Mannschaft | Pkt. | Gelbe Karten | Gelb-Rote Karten | Rote Karten |
|---|---|---|---|---|---|
| 1 | VfL Osnabrück | 66 | 66 | 0 | 0 |
| 2 | MSV Duisburg | 69 | 66 | 1 | 0 |
| 2 | Hansa Rostock | 69 | 64 | 0 | 1 |
| 4 | Energie Cottbus | 70 | 61 | 3 | 0 |
| 5 | TSV 1860 München | 76 | 67 | 3 | 0 |
| 5 | FC Viktoria Köln | 76 | 68 | 1 | 1 |
| 7 | SSV Ulm 1846 Fussball | 79 | 79 | 0 | 0 |
| 7 | TSG Hoffenheim II | 79 | 68 | 2 | 1 |
| 9 | SC Verl | 80 | 67 | 1 | 2 |
| 10 | SV Wehen Wiesbaden | 83 | 78 | 0 | 1 |
| 11 | FC Ingolstadt | 84 | 71 | 1 | 2 |
| 11 | TSV Havelse | 84 | 70 | 3 | 1 |
| 13 | Rot-Weiss Essen | 86 | 71 | 0 | 3 |
| 14 | Erzgebirge Aue | 87 | 77 | 0 | 2 |
| 14 | VfB Stuttgart II | 87 | 78 | 3 | 0 |
| 16 | 1. FC Saarbrücken | 89 | 76 | 1 | 2 |
| 17 | SV Waldhof Mannheim | 96 | 71 | 5 | 2 |
| 18 | 1. FC Schweinfurt 05 | 105 | 91 | 3 | 1 |
| 19 | Alemannia Aachen | 109 | 88 | 2 | 3 |
| 20 | Jahn Regensburg | 112 | 87 | 0 | 5 |