| Platz | Mannschaft | Pkt. | Gelbe Karten | Gelb-Rote Karten | Rote Karten |
|---|---|---|---|---|---|
| 1 | VfL Osnabrück | 59 | 59 | 0 | 0 |
| 2 | Energie Cottbus | 63 | 57 | 2 | 0 |
| 3 | MSV Duisburg | 65 | 62 | 1 | 0 |
| 4 | TSG Hoffenheim II | 66 | 60 | 2 | 0 |
| 4 | Hansa Rostock | 66 | 61 | 0 | 1 |
| 6 | FC Viktoria Köln | 67 | 59 | 1 | 1 |
| 7 | TSV 1860 München | 68 | 59 | 3 | 0 |
| 7 | SV Wehen Wiesbaden | 68 | 68 | 0 | 0 |
| 9 | SC Verl | 71 | 58 | 1 | 2 |
| 10 | FC Ingolstadt | 72 | 64 | 1 | 1 |
| 11 | TSV Havelse | 73 | 59 | 3 | 1 |
| 12 | SSV Ulm 1846 Fussball | 75 | 75 | 0 | 0 |
| 13 | VfB Stuttgart II | 76 | 70 | 2 | 0 |
| 14 | Erzgebirge Aue | 78 | 68 | 0 | 2 |
| 15 | Rot-Weiss Essen | 79 | 64 | 0 | 3 |
| 16 | 1. FC Saarbrücken | 82 | 69 | 1 | 2 |
| 17 | SV Waldhof Mannheim | 84 | 64 | 5 | 1 |
| 18 | 1. FC Schweinfurt 05 | 96 | 82 | 3 | 1 |
| 19 | Alemannia Aachen | 97 | 81 | 2 | 2 |
| 20 | Jahn Regensburg | 105 | 80 | 0 | 5 |