| Platz | Mannschaft | Pkt. | Gelbe Karten | Gelb-Rote Karten | Rote Karten |
|---|---|---|---|---|---|
| 1 | FC Ingolstadt | 40 | 40 | 0 | 0 |
| 2 | Energie Cottbus | 42 | 34 | 1 | 1 |
| 3 | SC Verl | 43 | 37 | 2 | 0 |
| 4 | SV Wehen Wiesbaden | 44 | 39 | 0 | 1 |
| 5 | FC Viktoria Köln | 45 | 40 | 0 | 1 |
| 6 | TSV 1860 München | 47 | 42 | 0 | 1 |
| 6 | 1. FC Saarbrücken | 47 | 44 | 1 | 0 |
| 8 | Dynamo Dresden | 48 | 40 | 1 | 1 |
| 9 | Borussia Dortmund II | 52 | 44 | 1 | 1 |
| 9 | Erzgebirge Aue | 52 | 44 | 1 | 1 |
| 11 | SV Sandhausen | 54 | 46 | 1 | 1 |
| 12 | Hansa Rostock | 55 | 55 | 0 | 0 |
| 13 | Arminia Bielefeld | 56 | 56 | 0 | 0 |
| 14 | SV Waldhof Mannheim | 57 | 51 | 2 | 0 |
| 15 | Rot-Weiss Essen | 58 | 45 | 1 | 2 |
| 16 | Hannover 96 II | 59 | 53 | 2 | 0 |
| 17 | SpVgg Unterhaching | 60 | 49 | 2 | 1 |
| 18 | VfL Osnabrück | 62 | 44 | 1 | 3 |
| 19 | VfB Stuttgart II | 63 | 52 | 2 | 1 |
| 20 | Alemannia Aachen | 73 | 58 | 0 | 3 |