| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | 1. FC Heidenheim | 62 | 57 | 0 | 1 |
| 2 | Hamburger SV | 67 | 64 | 1 | 0 |
| 2 | FC St. Pauli | 67 | 54 | 1 | 2 |
| 4 | 1. FC Nürnberg | 69 | 61 | 1 | 1 |
| 4 | Holstein Kiel | 69 | 64 | 0 | 1 |
| 6 | Hannover 96 | 70 | 60 | 0 | 2 |
| 7 | Werder Bremen | 73 | 70 | 1 | 0 |
| 7 | SC Paderborn 07 | 73 | 60 | 1 | 2 |
| 7 | FC Schalke 04 | 73 | 68 | 0 | 1 |
| 10 | Karlsruher SC | 74 | 60 | 3 | 1 |
| 11 | Jahn Regensburg | 77 | 67 | 0 | 2 |
| 12 | Dynamo Dresden | 79 | 68 | 2 | 1 |
| 13 | Fortuna Düsseldorf | 83 | 63 | 0 | 4 |
| 14 | FC Ingolstadt | 85 | 79 | 2 | 0 |
| 15 | Hansa Rostock | 92 | 87 | 0 | 1 |
| 16 | Erzgebirge Aue | 94 | 74 | 0 | 4 |
| 17 | SV Darmstadt 98 | 96 | 83 | 1 | 2 |
| 18 | SV Sandhausen | 100 | 89 | 2 | 1 |