| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | VfB Stuttgart | 57 | 49 | 1 | 1 |
| 2 | Dynamo Dresden | 65 | 65 | 0 | 0 |
| 3 | Eintracht Braunschweig | 66 | 66 | 0 | 0 |
| 4 | 1. FC Heidenheim | 67 | 58 | 3 | 0 |
| 5 | FC St. Pauli | 70 | 70 | 0 | 0 |
| 6 | 1. FC Union Berlin | 71 | 57 | 3 | 1 |
| 7 | 1. FC Kaiserslautern | 73 | 65 | 1 | 1 |
| 8 | Erzgebirge Aue | 78 | 67 | 2 | 1 |
| 9 | Würzburger Kickers | 87 | 79 | 1 | 1 |
| 10 | Arminia Bielefeld | 88 | 82 | 2 | 0 |
| 10 | VfL Bochum | 88 | 80 | 1 | 1 |
| 12 | SpVgg Greuther Fürth | 89 | 78 | 2 | 1 |
| 13 | Karlsruher SC | 92 | 80 | 4 | 0 |
| 13 | 1. FC Nürnberg | 92 | 81 | 2 | 1 |
| 15 | SV Sandhausen | 93 | 77 | 2 | 2 |
| 16 | Fortuna Düsseldorf | 95 | 78 | 4 | 1 |
| 16 | Hannover 96 | 95 | 82 | 1 | 2 |
| 18 | TSV 1860 München | 104 | 96 | 1 | 1 |