| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | MSV Duisburg | 77 | 62 | 0 | 3 |
| 2 | Hansa Rostock | 79 | 76 | 1 | 0 |
| 3 | Würzburger Kickers | 82 | 76 | 2 | 0 |
| 4 | 1. FC Kaiserslautern | 83 | 72 | 2 | 1 |
| 4 | Waldhof Mannheim | 83 | 72 | 2 | 1 |
| 6 | Hallescher FC | 93 | 82 | 2 | 1 |
| 7 | SV Meppen | 95 | 76 | 3 | 2 |
| 7 | Viktoria Köln | 95 | 92 | 1 | 0 |
| 9 | Bayern Munich | 97 | 81 | 2 | 2 |
| 10 | Eintracht Braunschweig | 98 | 82 | 2 | 2 |
| 11 | FC Ingolstadt | 103 | 77 | 2 | 4 |
| 12 | SG Sonnenhof Grossaspach | 104 | 76 | 6 | 2 |
| 13 | SpVgg Unterhaching | 107 | 98 | 3 | 0 |
| 14 | TSV 1860 München | 111 | 97 | 3 | 1 |
| 15 | FSV Zwickau | 112 | 96 | 2 | 2 |
| 15 | 1. FC Magdeburg | 112 | 87 | 0 | 5 |
| 17 | Preußen Münster | 114 | 95 | 3 | 2 |
| 18 | Chemnitzer FC | 117 | 106 | 2 | 1 |
| 19 | FC Carl Zeiss Jena | 118 | 97 | 2 | 3 |
| 20 | KFC Uerdingen | 124 | 104 | 5 | 1 |