| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | SV Elversberg | 81 | 67 | 3 | 1 |
| 2 | Waldhof Mannheim | 84 | 70 | 3 | 1 |
| 3 | SC Freiburg | 88 | 77 | 2 | 1 |
| 3 | Borussia Dortmund II | 88 | 79 | 3 | 0 |
| 5 | TSV 1860 München | 89 | 84 | 0 | 1 |
| 6 | Rot-Weiss Essen | 92 | 76 | 2 | 2 |
| 7 | 1. FC Saarbrücken | 97 | 82 | 0 | 3 |
| 8 | Viktoria Köln | 100 | 83 | 4 | 1 |
| 8 | VfB Oldenburg | 100 | 94 | 2 | 0 |
| 10 | FSV Zwickau | 103 | 84 | 3 | 2 |
| 10 | SC Verl | 103 | 98 | 0 | 1 |
| 12 | SV Meppen | 106 | 92 | 3 | 1 |
| 13 | MSV Duisburg | 108 | 88 | 5 | 1 |
| 14 | SV Wehen Wiesbaden | 109 | 88 | 2 | 3 |
| 15 | VfL Osnabrück | 110 | 97 | 1 | 2 |
| 16 | FC Ingolstadt | 116 | 94 | 4 | 2 |
| 17 | Dynamo Dresden | 119 | 116 | 1 | 0 |
| 18 | SpVgg Upper Franconia Bayreuth | 122 | 98 | 3 | 3 |
| 18 | Erzgebirge Aue | 122 | 104 | 1 | 3 |
| 20 | Hallescher FC | 131 | 101 | 5 | 3 |