| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | Holstein Kiel | 62 | 59 | 1 | 0 |
| 2 | Chemnitzer FC | 63 | 51 | 4 | 0 |
| 3 | 1. FSV Mainz 05 | 72 | 67 | 0 | 1 |
| 4 | VfB Stuttgart | 76 | 62 | 3 | 1 |
| 5 | Preußen Münster | 88 | 66 | 4 | 2 |
| 6 | SV Wehen Wiesbaden | 89 | 71 | 1 | 3 |
| 7 | Stuttgarter Kickers | 90 | 69 | 2 | 3 |
| 8 | SpVgg Unterhaching | 91 | 67 | 3 | 3 |
| 9 | Arminia Bielefeld | 94 | 73 | 2 | 3 |
| 10 | Hansa Rostock | 97 | 77 | 5 | 1 |
| 11 | Rot-Weiß Erfurt | 98 | 87 | 2 | 1 |
| 12 | MSV Duisburg | 99 | 83 | 2 | 2 |
| 12 | Dynamo Dresden | 99 | 79 | 5 | 1 |
| 14 | Energie Cottbus | 101 | 81 | 5 | 1 |
| 15 | Hallescher FC | 103 | 82 | 2 | 3 |
| 16 | Fortuna Köln | 111 | 97 | 3 | 1 |
| 17 | Borussia Dortmund II | 113 | 69 | 8 | 4 |
| 18 | VfL Osnabrück | 116 | 88 | 1 | 5 |
| 19 | Jahn Regensburg | 118 | 101 | 4 | 1 |
| 20 | SG Sonnenhof Grossaspach | 124 | 95 | 3 | 4 |