| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | VfL Osnabrück | 58 | 58 | 0 | 0 |
| 2 | TSG Hoffenheim | 60 | 54 | 2 | 0 |
| 2 | Energie Cottbus | 60 | 54 | 2 | 0 |
| 4 | MSV Duisburg | 64 | 61 | 1 | 0 |
| 4 | Viktoria Köln | 64 | 56 | 1 | 1 |
| 4 | Hansa Rostock | 64 | 59 | 0 | 1 |
| 7 | SC Verl | 65 | 57 | 1 | 1 |
| 8 | SV Wehen Wiesbaden | 66 | 66 | 0 | 0 |
| 9 | TSV 1860 München | 67 | 58 | 3 | 0 |
| 10 | FC Ingolstadt | 71 | 63 | 1 | 1 |
| 10 | SSV Ulm 1846 Fussball | 71 | 71 | 0 | 0 |
| 10 | TSV Havelse | 71 | 57 | 3 | 1 |
| 13 | VfB Stuttgart | 73 | 67 | 2 | 0 |
| 14 | Waldhof Mannheim | 76 | 59 | 4 | 1 |
| 15 | Erzgebirge Aue | 77 | 67 | 0 | 2 |
| 16 | Rot-Weiss Essen | 78 | 63 | 0 | 3 |
| 17 | 1. FC Saarbrücken | 80 | 67 | 1 | 2 |
| 18 | 1. FC Schweinfurt 05 | 90 | 76 | 3 | 1 |
| 18 | Alemannia Aachen | 90 | 74 | 2 | 2 |
| 20 | Jahn Regensburg | 101 | 76 | 0 | 5 |