| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | VfL Osnabrück | 54 | 54 | 0 | 0 |
| 2 | TSG Hoffenheim | 55 | 49 | 2 | 0 |
| 3 | Hansa Rostock | 57 | 52 | 0 | 1 |
| 4 | SC Verl | 59 | 51 | 1 | 1 |
| 4 | MSV Duisburg | 59 | 56 | 1 | 0 |
| 6 | SV Wehen Wiesbaden | 60 | 60 | 0 | 0 |
| 6 | Energie Cottbus | 60 | 54 | 2 | 0 |
| 6 | Viktoria Köln | 60 | 52 | 1 | 1 |
| 9 | TSV 1860 München | 61 | 52 | 3 | 0 |
| 10 | Waldhof Mannheim | 67 | 55 | 4 | 0 |
| 10 | VfB Stuttgart | 67 | 61 | 2 | 0 |
| 12 | TSV Havelse | 68 | 54 | 3 | 1 |
| 13 | FC Ingolstadt | 69 | 61 | 1 | 1 |
| 14 | SSV Ulm 1846 Fussball | 70 | 70 | 0 | 0 |
| 15 | Erzgebirge Aue | 72 | 62 | 0 | 2 |
| 16 | Rot-Weiss Essen | 74 | 59 | 0 | 3 |
| 17 | 1. FC Saarbrücken | 76 | 63 | 1 | 2 |
| 18 | 1. FC Schweinfurt 05 | 87 | 73 | 3 | 1 |
| 18 | Alemannia Aachen | 87 | 71 | 2 | 2 |
| 20 | Jahn Regensburg | 97 | 72 | 0 | 5 |