| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | FC Ismaning | 54 | 44 | 0 | 2 |
| 2 | 1. FC Nuremberg | 58 | 40 | 1 | 3 |
| 3 | TSV 1860 Munich | 60 | 55 | 0 | 1 |
| 4 | TSV 1860 Rosenheim | 65 | 62 | 1 | 0 |
| 5 | TSV 1896 Rain | 69 | 54 | 0 | 3 |
| 5 | FV Illertissen | 69 | 64 | 0 | 1 |
| 7 | SV Seligenporten | 70 | 62 | 1 | 1 |
| 8 | Bayern Munich | 73 | 60 | 1 | 2 |
| 9 | FC Augsburg | 87 | 56 | 2 | 5 |
| 9 | SC Eltersdorf | 87 | 74 | 1 | 2 |
| 11 | Viktoria Aschaffenburg | 89 | 76 | 1 | 2 |
| 12 | TSV Buchbach | 91 | 71 | 5 | 1 |
| 13 | SpVgg Greuther Furth | 92 | 68 | 3 | 3 |
| 14 | FC Memmingen | 93 | 69 | 3 | 3 |
| 15 | SV Heimstetten | 95 | 87 | 1 | 1 |
| 15 | SpVgg Bayern Hof | 95 | 61 | 3 | 5 |
| 17 | FC Ingolstadt | 96 | 65 | 2 | 5 |
| 18 | Würzburger Kickers | 98 | 85 | 1 | 2 |
| 19 | VfL Frohnlach | 104 | 90 | 3 | 1 |
| 20 | Eintracht Bamberg | 120 | 86 | 3 | 5 |