| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | 1. FC Nuremberg | 70 | 64 | 2 | 0 |
| 2 | TSV 1860 Munich | 72 | 63 | 3 | 0 |
| 3 | FC Memmingen | 75 | 72 | 1 | 0 |
| 4 | Jahn Regensburg | 80 | 69 | 2 | 1 |
| 5 | SpVgg Unterhaching | 83 | 72 | 2 | 1 |
| 6 | SpVgg Greuther Furth | 84 | 76 | 1 | 1 |
| 7 | Wacker Burghausen | 85 | 74 | 2 | 1 |
| 8 | FC Augsburg | 86 | 64 | 4 | 2 |
| 8 | Bayern Munich | 86 | 60 | 2 | 4 |
| 10 | SV Schalding-Heining | 92 | 81 | 2 | 1 |
| 11 | FC Ingolstadt | 94 | 65 | 3 | 4 |
| 12 | TSV 1896 Rain | 96 | 72 | 3 | 3 |
| 13 | Viktoria Aschaffenburg | 97 | 73 | 3 | 3 |
| 14 | FV Illertissen | 103 | 77 | 2 | 4 |
| 15 | FC Amberg | 110 | 94 | 2 | 2 |
| 16 | TSV Buchbach | 114 | 96 | 1 | 3 |
| 17 | SpVgg Upper Franconia Bayreuth | 120 | 75 | 5 | 6 |
| 18 | 1. FC Schweinfurt 05 | 142 | 90 | 4 | 8 |