| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | 1. FC Nuremberg | 63 | 50 | 1 | 2 |
| 2 | FV Illertissen | 69 | 53 | 2 | 2 |
| 3 | Bayern Munich | 75 | 51 | 3 | 3 |
| 4 | SV Schalding-Heining | 84 | 73 | 2 | 1 |
| 5 | TSV 1860 München | 85 | 69 | 2 | 2 |
| 6 | SV Seligenporten | 87 | 73 | 3 | 1 |
| 7 | SpVgg Upper Franconia Bayreuth | 88 | 67 | 2 | 3 |
| 8 | FC Ingolstadt | 89 | 81 | 1 | 1 |
| 9 | Wacker Burghausen | 94 | 76 | 1 | 3 |
| 10 | FC Augsburg | 96 | 72 | 3 | 3 |
| 11 | VfR Garching | 97 | 77 | 5 | 1 |
| 12 | 1. FC Schweinfurt 05 | 103 | 94 | 3 | 0 |
| 13 | SpVgg Greuther Furth | 104 | 75 | 3 | 4 |
| 14 | VfB Eichstätt | 112 | 98 | 3 | 1 |
| 15 | FC Pipinsried | 113 | 82 | 2 | 5 |
| 16 | TSV Buchbach | 114 | 84 | 5 | 3 |
| 16 | FC Memmingen | 114 | 94 | 5 | 1 |
| 18 | TSV 1860 Rosenheim | 116 | 80 | 2 | 6 |
| 19 | FC Unterföhring | 120 | 97 | 6 | 1 |