| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | Bayern Munich | 54 | 46 | 1 | 1 |
| 2 | FC Augsburg | 60 | 55 | 0 | 1 |
| 3 | 1. FC Nuremberg | 69 | 57 | 4 | 0 |
| 4 | Wacker Burghausen | 76 | 71 | 0 | 1 |
| 5 | Viktoria Aschaffenburg | 78 | 67 | 2 | 1 |
| 6 | FC Memmingen | 79 | 68 | 2 | 1 |
| 6 | VfB Eichstätt | 79 | 73 | 2 | 0 |
| 8 | VfR Garching | 80 | 68 | 4 | 0 |
| 9 | SpVgg Greuther Furth | 84 | 60 | 3 | 3 |
| 10 | SV Schalding-Heining | 85 | 58 | 4 | 3 |
| 10 | SpVgg Upper Franconia Bayreuth | 85 | 69 | 2 | 2 |
| 12 | SV Heimstetten | 91 | 72 | 3 | 2 |
| 13 | TSV Buchbach | 93 | 77 | 2 | 2 |
| 14 | FV Illertissen | 94 | 70 | 3 | 3 |
| 15 | 1. FC Schweinfurt 05 | 102 | 92 | 0 | 2 |
| 16 | FC Ingolstadt | 110 | 90 | 5 | 1 |
| 17 | TSV 1860 Rosenheim | 114 | 84 | 5 | 3 |
| 18 | FC Pipinsried | 116 | 84 | 4 | 4 |