| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | Bayern Munich | 61 | 50 | 2 | 1 |
| 2 | TSV Aubstadt | 83 | 72 | 2 | 1 |
| 3 | TSV Buchbach | 88 | 82 | 2 | 0 |
| 4 | Wacker Burghausen | 89 | 74 | 0 | 3 |
| 5 | FC Augsburg | 90 | 79 | 2 | 1 |
| 6 | Viktoria Aschaffenburg | 92 | 84 | 1 | 1 |
| 7 | FV Illertissen | 93 | 90 | 1 | 0 |
| 8 | VfB Eichstätt | 96 | 86 | 0 | 2 |
| 9 | SpVgg Upper Franconia Bayreuth | 99 | 83 | 2 | 2 |
| 10 | FC Memmingen | 102 | 81 | 2 | 3 |
| 11 | 1. FC Nuremberg | 103 | 70 | 6 | 3 |
| 12 | TSV 1860 Rosenheim | 104 | 83 | 2 | 3 |
| 12 | SpVgg Unterhaching | 104 | 101 | 1 | 0 |
| 14 | 1. FC Schweinfurt 05 | 106 | 76 | 5 | 3 |
| 15 | SC Eltersdorf | 114 | 90 | 3 | 3 |
| 16 | SV Schalding-Heining | 118 | 90 | 1 | 5 |
| 17 | FC Pipinsried | 129 | 93 | 7 | 3 |
| 18 | SV Heimstetten | 134 | 103 | 2 | 5 |
| 18 | SpVgg Greuther Furth | 134 | 103 | 7 | 2 |
| 20 | TSV 1896 Rain | 140 | 111 | 3 | 4 |