| Rank | Team | Pts. | Yellow cards | Second yellow cards | Straight red cards |
|---|---|---|---|---|---|
| 1 | 1. FC Magdeburg | 59 | 56 | 1 | 0 |
| 2 | Borussia Dortmund II | 65 | 57 | 1 | 1 |
| 3 | VfL Osnabrück | 70 | 64 | 2 | 0 |
| 4 | Hertha BSC II | 81 | 66 | 0 | 3 |
| 4 | Wuppertaler SV | 81 | 70 | 2 | 1 |
| 6 | Werder Bremen | 87 | 73 | 3 | 1 |
| 7 | Rot Weiss Ahlen | 88 | 69 | 3 | 2 |
| 8 | FC St. Pauli | 89 | 71 | 1 | 3 |
| 9 | Bayer 04 Leverkusen | 90 | 71 | 3 | 2 |
| 9 | Kickers Emden | 90 | 79 | 2 | 1 |
| 11 | 1. FC Union Berlin | 91 | 64 | 4 | 3 |
| 12 | Holstein Kiel | 92 | 76 | 2 | 2 |
| 12 | Dynamo Dresden | 92 | 71 | 2 | 3 |
| 12 | Borussia Monchengladbach II | 92 | 73 | 3 | 2 |
| 15 | Hamburger SV II | 108 | 84 | 3 | 3 |
| 16 | Rot-Weiß Erfurt | 109 | 85 | 3 | 3 |
| 17 | VfB Lubeck | 112 | 92 | 5 | 1 |
| 18 | Fortuna Düsseldorf | 114 | 86 | 1 | 5 |
| 19 | SV Wilhelmshaven | 115 | 81 | 3 | 5 |