| Place | Player | Team | Goals | Penalties |
|---|---|---|---|---|
| 1. | Lukas Podolski | 1. FC Köln | 24 | 5 |
| 2. | Klemen Lavric | Dynamo Dresden | 18 | 0 |
| 3. | Abdelaziz Ahanfouf | MSV Duisburg | 17 | 1 |
| 4. | Francisco Copado | SpVgg Unterhaching | 16 | 4 |
| 4. | Arie van Lent | Eintracht Frankfurt | 16 | 0 |
| 6. | Michal Kolomaznik | TSV 1860 München | 15 | 0 |
| 6. | Stefan Reisinger | Wacker Burghausen | 15 | 0 |
| 8. | Nico Patschinski | Eintracht Trier | 12 | 2 |
| 8. | Henrich Bencik | 1. FC Saarbrücken | 12 | 0 |
| 10. | Matthias Scherz | 1. FC Köln | 11 | 0 |
| 10. | Kai Michalke | Alemannia Aachen | 11 | 0 |
| 10. | Markus Kurth | MSV Duisburg | 11 | 0 |
| 10. | Stanko Svitlica | Rot Weiss Ahlen | 11 | 2 |
| 14. | Andrzej Juskowiak | Erzgebirge Aue | 9 | 0 |
| 14. | Sascha Rosler | SpVgg Greuther Fürth | 9 | 1 |
| 14. | Alexander Meier | Eintracht Frankfurt | 9 | 1 |
| 14. | Joshua Kennedy | Dynamo Dresden | 9 | 0 |
| 14. | Sebastian Helbig | Erzgebirge Aue | 9 | 0 |
| 14. | Marius Ebbers | 1. FC Köln | 9 | 0 |
| 14. | Marcus Feinbier | SpVgg Greuther Fürth | 9 | 0 |
| 21. | Youssef Mokhtari | Energie Cottbus | 8 | 3 |
| 21. | Erik Meijer | Alemannia Aachen | 8 | 1 |
| 21. | Salif Keita | Rot-Weiß Oberhausen | 8 | 0 |
| 21. | Sebastian Freis | Karlsruher SC | 8 | 0 |
| 21. | Ronald Schmidt | Wacker Burghausen | 8 | 2 |
| 21. | Sean Dundee | Karlsruher SC | 8 | 0 |
| 21. | Du-Ri Cha | Eintracht Frankfurt | 8 | 0 |
| 28. | Mike Rietpietsch | Rot-Weiß Oberhausen | 7 | 0 |
| 28. | Benjamin Kohler | Eintracht Frankfurt | 7 | 0 |
| 28. | Matthias Hagner | 1. FC Saarbrücken | 7 | 1 |
| 28. | Gunter Thiebaut | 1. FC Saarbrücken | 7 | 2 |
| 28. | Paul Agostino | TSV 1860 München | 7 | 0 |
| 33. | Skerdilaid Curri | Erzgebirge Aue | 6 | 0 |
| 33. | Christian Frohlich | Dynamo Dresden | 6 | 2 |
| 33. | Marcel Schied | SpVgg Unterhaching | 6 | 0 |
| 33. | Peter van Houdt | MSV Duisburg | 6 | 0 |
| 33. | Petr Ruman | SpVgg Greuther Fürth | 6 | 0 |
| 33. | Pavel David | Rot-Weiß Erfurt | 6 | 0 |
| 33. | Matthias Lehmann | TSV 1860 München | 6 | 5 |
| 33. | Francis Kioyo | Rot-Weiss Essen | 6 | 0 |
| 41. | Stijn Haeldermans | Rot-Weiß Oberhausen | 5 | 0 |
| 41. | Ioannis Masmanidis | Karlsruher SC | 5 | 0 |
| 41. | Taifour Diane | 1. FC Saarbrücken | 5 | 0 |
| 41. | Zeljko Sopic | Rot Weiss Ahlen | 5 | 1 |
| 41. | Ersin Demir | Erzgebirge Aue | 5 | 0 |
| 41. | Mac Younga-Mouhani | Wacker Burghausen | 5 | 0 |
| 41. | Roberto Hilbert | SpVgg Greuther Fürth | 5 | 0 |
| 41. | Iwan Sajenko | Karlsruher SC | 5 | 1 |
| 41. | Sergio da Silva Pinto | Alemannia Aachen | 5 | 2 |
| 41. | Danny Schwarz | Karlsruher SC | 5 | 0 |