| Place | Player | Team | Goals | Penalties |
|---|---|---|---|---|
| 1. | Giovanni Federico | Karlsruher SC | 19 | 3 |
| 2. | Edmond Kapllani | Karlsruher SC | 17 | 0 |
| 3. | Axel Lawaree | FC Augsburg | 15 | 4 |
| 4. | Patrick Helmes | 1. FC Köln | 14 | 2 |
| 4. | Suat Turker | Kickers Offenbach | 14 | 0 |
| 6. | Klemen Lavric | MSV Duisburg | 12 | 0 |
| 6. | Christian Timm | SpVgg Greuther Fürth | 12 | 0 |
| 6. | Youssef Mokhtari | MSV Duisburg | 12 | 4 |
| 6. | Enrico Kern | Hansa Rostock | 12 | 3 |
| 10. | Milivoje Novakovic | 1. FC Köln | 10 | 0 |
| 10. | Berkant Goktan | TSV 1860 München | 10 | 0 |
| 10. | Alexander Iaschwili | SC Freiburg | 10 | 5 |
| 10. | Dragan Bogavac | Wacker Burghausen | 10 | 0 |
| 10. | Roda Antar | SC Freiburg | 10 | 0 |
| 15. | Tomas Klinka | Erzgebirge Aue | 9 | 0 |
| 15. | Mohamadou Idrissou | MSV Duisburg | 9 | 0 |
| 15. | Robert Lechleiter | SpVgg Unterhaching | 9 | 0 |
| 15. | Thomas Kleine | SpVgg Greuther Fürth | 9 | 0 |
| 15. | Matthias Scherz | 1. FC Köln | 9 | 2 |
| 15. | Nemanja Vucicevic | TSV 1860 München | 9 | 0 |
| 15. | Anel Dzaka | TuS Koblenz | 9 | 1 |
| 22. | Youssef Mohamad | SC Freiburg | 8 | 0 |
| 22. | Andrzej Juskowiak | Erzgebirge Aue | 8 | 0 |
| 22. | Danko Boskovic | Rot-Weiss Essen | 8 | 0 |
| 22. | Timo Rottger | SC Paderborn 07 | 8 | 0 |
| 22. | Jonathan Pitroipa | SC Freiburg | 8 | 0 |
| 22. | Markus Kurth | MSV Duisburg | 8 | 0 |
| 28. | Goran Sukalo | TuS Koblenz | 7 | 1 |
| 28. | Rene Muller | SC Paderborn 07 | 7 | 0 |
| 28. | Stephan Sieger | Kickers Offenbach | 7 | 3 |
| 28. | Sebastian Freis | Karlsruher SC | 7 | 0 |
| 28. | Ivica Grlic | MSV Duisburg | 7 | 0 |
| 28. | Marek Krejci | Wacker Burghausen | 7 | 1 |
| 28. | Tamas Hajnal | 1. FC Kaiserslautern | 7 | 1 |
| 28. | Noureddine Daham | 1. FC Kaiserslautern | 7 | 0 |
| 28. | Markus Daun | MSV Duisburg | 7 | 0 |
| 28. | Dordije Cetkovic | Hansa Rostock | 7 | 0 |
| 28. | Danny Fuchs | SpVgg Greuther Fürth | 7 | 0 |
| 39. | Christian Rahn | Hansa Rostock | 6 | 0 |
| 39. | Massimilian Porcello | Karlsruher SC | 6 | 0 |
| 39. | Bradley Carnell | Karlsruher SC | 6 | 0 |
| 39. | Steffen Bohl | 1. FC Kaiserslautern | 6 | 0 |
| 39. | Fiete Sykora | FC Carl Zeiss Jena | 6 | 0 |
| 39. | Christian Frohlich | FC Carl Zeiss Jena | 6 | 3 |
| 39. | Thorsten Burkhardt | Wacker Burghausen | 6 | 0 |
| 46. | Silvio Meissner | 1. FC Kaiserslautern | 5 | 0 |
| 46. | Leonhard Haas | FC Augsburg | 5 | 0 |
| 46. | Dimitar Rangelow | Erzgebirge Aue | 5 | 0 |
| 46. | Dino Toppmoller | Kickers Offenbach | 5 | 0 |
| 46. | Zafer Yelen | Hansa Rostock | 5 | 1 |