| Place | Player | Team | Goals | Penalties |
|---|---|---|---|---|
| 1. | Milivoje Novakovic | 1. FC Köln | 20 | 0 |
| 2. | Rob Friend | Borussia Mönchengladbach | 18 | 0 |
| 3. | Patrick Helmes | 1. FC Köln | 17 | 3 |
| 4. | Felix Borja | 1. FSV Mainz 05 | 16 | 0 |
| 5. | Thomas Reichenberger | VfL Osnabrück | 15 | 0 |
| 5. | Oliver Neuville | Borussia Mönchengladbach | 15 | 4 |
| 7. | Chinedu Obasi | TSG Hoffenheim | 12 | 1 |
| 7. | Stefan Reisinger | SpVgg Greuther Fürth | 12 | 0 |
| 7. | Demba Ba | TSG Hoffenheim | 12 | 0 |
| 7. | Suat Turker | Kickers Offenbach | 12 | 1 |
| 11. | Ardijan Djokaj | TuS Koblenz | 11 | 0 |
| 12. | Martin Lanig | SpVgg Greuther Fürth | 10 | 0 |
| 12. | Daniel Gunkel | 1. FSV Mainz 05 | 10 | 1 |
| 12. | Francisco Copado | TSG Hoffenheim | 10 | 2 |
| 12. | Ronny Konig | SV Wehen Wiesbaden | 10 | 0 |
| 12. | Berkant Goktan | TSV 1860 München | 10 | 0 |
| 12. | Adam Nemec | Erzgebirge Aue | 10 | 0 |
| 18. | Sascha Rosler | Borussia Mönchengladbach | 9 | 0 |
| 19. | Antonio Di Salvo | TSV 1860 München | 8 | 0 |
| 19. | Tobias Werner | FC Carl Zeiss Jena | 8 | 0 |
| 19. | Szilard Nemeth | Alemannia Aachen | 8 | 0 |
| 19. | Sandor Torghelle | FC Carl Zeiss Jena | 8 | 0 |
| 23. | Jan Simak | FC Carl Zeiss Jena | 7 | 5 |
| 23. | Alexander Lobe | SC Paderborn 07 | 7 | 0 |
| 23. | Jiri Kaufman | Erzgebirge Aue | 7 | 1 |
| 23. | Bakary Diakite | SV Wehen Wiesbaden | 7 | 0 |
| 23. | Thomas Cichon | VfL Osnabrück | 7 | 6 |
| 23. | Roda Antar | 1. FC Köln | 7 | 0 |
| 23. | Jonathan Pitroipa | SC Freiburg | 7 | 0 |
| 23. | Erwin Koen | SC Paderborn 07 | 7 | 1 |
| 23. | Daniel Bierofka | TSV 1860 München | 7 | 0 |
| 32. | Sejad Salihovic | TSG Hoffenheim | 6 | 2 |
| 32. | Srdjan Baljak | 1. FSV Mainz 05 | 6 | 0 |
| 32. | Maximilian Nicu | SV Wehen Wiesbaden | 6 | 0 |
| 32. | Aleksandar Kotuljac | SpVgg Greuther Fürth | 6 | 0 |
| 32. | Josh Simpson | 1. FC Kaiserslautern | 6 | 0 |
| 32. | Markus Feulner | 1. FSV Mainz 05 | 6 | 0 |
| 32. | Rene Schnitzler | FC St. Pauli | 6 | 0 |
| 32. | Bernd Nehrig | SpVgg Greuther Fürth | 6 | 2 |
| 40. | Matthias Lehmann | Alemannia Aachen | 5 | 0 |
| 40. | Laurentiu Reghecampf | Alemannia Aachen | 5 | 4 |
| 40. | Carlos Eduardo | TSG Hoffenheim | 5 | 0 |
| 40. | Marcel Ziemer | 1. FC Kaiserslautern | 5 | 0 |
| 40. | Karim Matmour | SC Freiburg | 5 | 0 |
| 40. | Michael Thurk | FC Augsburg | 5 | 0 |
| 40. | Marcel Schied | FC Carl Zeiss Jena | 5 | 0 |
| 40. | Gregg Berhalter | TSV 1860 München | 5 | 4 |
| 40. | Vedad Ibisevic | TSG Hoffenheim | 5 | 0 |
| 40. | Dragan Bogavac | TuS Koblenz | 5 | 0 |
| 40. | Todor Kolew | Alemannia Aachen | 5 | 0 |