| Place | Player | Team | Goals | Penalties |
|---|---|---|---|---|
| 1. | Anton Fink | SpVgg Unterhaching | 21 | 6 |
| 2. | Sercan Guvenisik | SC Paderborn 07 | 17 | 3 |
| 2. | Torsten Oehrl | Werder Bremen | 17 | 5 |
| 4. | Karim Benyamina | 1. FC Union Berlin | 16 | 0 |
| 5. | Thomas Muller | Bayern Munich | 15 | 0 |
| 6. | Frank Loning | SC Paderborn 07 | 14 | 0 |
| 6. | Halil Savran | Dynamo Dresden | 14 | 2 |
| 8. | Marco Sailer | VfR Aalen | 12 | 1 |
| 8. | Massimo Cannizzaro | Rot-Weiß Erfurt | 12 | 0 |
| 8. | Marco Calamita | Wacker Burghausen | 12 | 0 |
| 11. | Enrico Neitzel | Kickers Emden | 11 | 0 |
| 11. | Marco Christ | Fortuna Düsseldorf | 11 | 1 |
| 11. | Emre Ozturk | SV Sandhausen | 11 | 0 |
| 11. | Pavel Dobry | Dynamo Dresden | 11 | 0 |
| 15. | Shergo Biran | 1. FC Union Berlin | 10 | 0 |
| 15. | Salvatore Amirante | FC Carl Zeiss Jena | 10 | 0 |
| 15. | Sebastian Hahnge | FC Carl Zeiss Jena | 10 | 0 |
| 15. | Thomas Broker | Dynamo Dresden | 10 | 0 |
| 15. | Daniel Sikorski | Bayern Munich | 10 | 1 |
| 20. | Arne Feick | Erzgebirge Aue | 9 | 0 |
| 20. | Albert Bunjaku | Rot-Weiß Erfurt | 9 | 1 |
| 20. | Roberto Pinto | SV Sandhausen | 9 | 3 |
| 20. | Tufan Tosunoglu | Kickers Offenbach | 9 | 0 |
| 20. | Julian Schieber | VfB Stuttgart | 9 | 0 |
| 25. | Stefan Zinnow | Kickers Offenbach | 8 | 0 |
| 25. | Domi Kumbela | SC Paderborn 07 | 8 | 3 |
| 25. | Robert Zillner | SpVgg Unterhaching | 8 | 0 |
| 25. | Ranisav Jovanovic | Fortuna Düsseldorf | 8 | 0 |
| 29. | Marcel Reichwein | Wuppertaler SV | 7 | 2 |
| 29. | Sebastian Rudy | VfB Stuttgart | 7 | 4 |
| 29. | Thomas Rathgeber | SpVgg Unterhaching | 7 | 0 |
| 29. | Petr Stoilov | Jahn Regensburg | 7 | 0 |
| 29. | Tobias Damm | Wuppertaler SV | 7 | 0 |
| 29. | Jovan Damjanovic | SC Paderborn 07 | 7 | 2 |
| 29. | Sebastian Hofmann | VfB Stuttgart | 7 | 1 |
| 29. | Jurgen Schmid | Jahn Regensburg | 7 | 0 |
| 29. | Huzeyfe Dogan | 1. FC Union Berlin | 7 | 0 |
| 29. | Deniz Yilmaz | Bayern Munich | 7 | 0 |
| 29. | Kingsley Onuegbu | Eintracht Braunschweig | 7 | 0 |
| 40. | Johannes Rahn | VfB Stuttgart | 6 | 0 |
| 40. | Sreto Ristic | SV Sandhausen | 6 | 0 |
| 40. | Tobias Zellner | Jahn Regensburg | 6 | 2 |
| 40. | Marcel Schied | Eintracht Braunschweig | 6 | 0 |
| 40. | Mehmet Ekici | Bayern Munich | 6 | 1 |
| 40. | Marc Hensel | Erzgebirge Aue | 6 | 0 |
| 40. | Ali Lukunku | Erzgebirge Aue | 6 | 2 |
| 40. | Kenan Sahin | 1. FC Union Berlin | 6 | 0 |
| 40. | Steffen Bohl | VfR Aalen | 6 | 0 |
| 40. | Rudolf Zedi | Kickers Emden | 6 | 1 |
| 40. | Axel Lawaree | Fortuna Düsseldorf | 6 | 0 |