| Player | Matches | Goals | Penalties | First match | Last match |
|---|---|---|---|---|---|
| Heller, Marcel | 11 | 3 | 0 | 2007-02-06 | 2009-03-31 |
| Helmes, Patrick | 9 | 3 | 0 | 2005-02-08 | 2006-09-05 |
| Hengen, Thomas | 13 | 0 | 0 | 1994-09-06 | 1996-03-26 |
| Hennings, Rouwen | 21 | 13 | 0 | 2007-02-21 | 2009-02-10 |
| Henrichs, Benjamin | 17 | 0 | 0 | 2016-09-02 | 2019-06-30 |
| Herbst, Thomas | 6 | 2 | 0 | 1983-03-29 | 1983-06-12 |
| Herget, Matthias | 3 | 2 | 1 | 1983-10-04 | 1983-11-19 |
| Herrlich, Heiko | 23 | 17 | 0 | 1990-05-15 | 1993-09-21 |
| Herrmann, Patrick | 14 | 2 | 0 | 2010-09-03 | 2013-06-12 |
| Hertzsch, Ingo | 13 | 0 | 0 | 1997-11-25 | 1999-10-08 |
| Hieronymus, Holger | 9 | 1 | 0 | 1980-04-02 | 1982-02-24 |
| Hilbert, Roberto | 12 | 3 | 0 | 2005-03-25 | 2006-10-10 |
| Hildebrand, Timo | 18 | 0 | 0 | 1999-09-21 | 2001-10-05 |
| Hinkel, Andreas | 8 | 0 | 0 | 2002-02-12 | 2003-02-11 |
| Hitzlsperger, Thomas | 20 | 3 | 0 | 2002-02-12 | 2004-06-02 |
| Hochstätter, Christian | 10 | 1 | 0 | 1984-09-11 | 1990-03-28 |
| Hoffmann, André | 4 | 0 | 0 | 2013-08-13 | 2013-11-19 |
| Hoffmann, Daniel | 1 | 0 | 0 | 1992-10-13 | 1992-10-13 |
| Hofmann, Jonas | 10 | 5 | 0 | 2013-08-13 | 2014-10-14 |
| Hofmann, Philipp | 17 | 9 | 1 | 2013-09-06 | 2015-06-23 |
| Holtby, Lewis | 24 | 14 | 0 | 2009-08-11 | 2013-06-12 |
| Hönerbach, Mathias | 2 | 0 | 0 | 1983-03-29 | 1983-04-26 |
| Hönnscheidt, Norbert | 1 | 0 | 0 | 1980-11-18 | 1980-11-18 |
| Hoos, Herbert | 1 | 0 | 0 | 1984-04-17 | 1984-04-17 |
| Horn, Jannes | 2 | 0 | 0 | 2017-09-01 | 2017-09-05 |
| Horn, Timo | 4 | 0 | 0 | 2013-08-13 | 2014-11-18 |
| Hornschuh, Marc | 11 | 0 | 0 | 2010-11-16 | 2012-11-14 |
| Höwedes, Benedikt | 22 | 3 | 0 | 2007-11-16 | 2010-08-11 |
| Hubner, Michael | 5 | 2 | 0 | 1990-05-15 | 1990-12-18 |
| Hummels, Mats | 21 | 5 | 2 | 2007-03-27 | 2010-08-11 |
| Hunt, Aaron | 13 | 3 | 0 | 2005-09-06 | 2008-10-15 |
| Huseinbasic, Denis | 5 | 2 | 0 | 2022-11-19 | 2023-06-25 |
| Huth, Jannik | 2 | 0 | 0 | 2016-09-02 | 2016-10-11 |
| Huth, Robert | 4 | 0 | 0 | 2004-05-30 | 2005-09-06 |
| Hutwelker, Karsten | 1 | 0 | 0 | 1992-04-21 | 1992-04-21 |
| Ibrahimovic, Arijon | 1 | 0 | 0 | 2025-11-14 | 2025-11-14 |
| Illgner, Bodo | 7 | 0 | 0 | 1985-11-16 | 1987-04-28 |
| Immel, Eike | 19 | 0 | 0 | 1979-11-20 | 1986-03-11 |
| Iyoha, Emmanuel | 2 | 0 | 0 | 2019-03-21 | 2019-03-26 |
| Jaeckel, Paul | 2 | 0 | 0 | 2020-11-12 | 2021-05-31 |
| Jähnig, Uwe | 1 | 0 | 0 | 1992-03-10 | 1992-03-10 |
| Jaissle, Matthias | 1 | 0 | 0 | 2009-02-10 | 2009-02-10 |
| Jakobs, Ismail | 9 | 0 | 0 | 2020-09-03 | 2021-06-06 |
| Jancker, Carsten | 2 | 0 | 0 | 1993-12-14 | 1994-05-10 |
| Jander, Caspar | 3 | 0 | 0 | 2025-03-21 | 2025-06-18 |
| Janelt, Vitaly | 10 | 0 | 0 | 2019-09-05 | 2021-06-06 |
| Jansen, Marcell | 4 | 1 | 0 | 2004-11-16 | 2005-08-16 |
| Jantschke, Tony | 18 | 0 | 0 | 2010-09-07 | 2013-06-12 |
| Jeltsch, Finn | 4 | 0 | 0 | 2025-09-05 | 2025-11-18 |
| Jentzsch, Simon | 12 | 0 | 0 | 1996-09-04 | 1998-05-30 |